app.models#

app.models.acmgseqvar#

Models for ACMG sequence variant.

class app.models.acmgseqvar.AcmgSeqVar(**kwargs)#

ACMG sequence variant.

acmg_rank: AcmgRank#: ACMG criteria.

id: Mapped[UUID]#: UUID of the ACMG sequence variant.

seqvar_name: str#: Sequence variant ID.

user: UUID#: User who created the ACMG sequence variant.

app.models.adminmsg#

Models for admin messages.

class app.models.adminmsg.AdminMessage(**kwargs)#

Message to be set by administrators.

We currently only support read-only access, must be created via admin interface.

active_start: datetime#: When to start displaying the message.

active_stop: datetime#: When to stop displaying the message.

enabled#: Whether the message is enabled at all.

id: Mapped[UUID]#: UUID of the message.

text: str#: The message’s text.

title: str#: Message title.

app.models.bookmark#

Models for bookmarks of variants and genes.

class app.models.bookmark.Bookmark(**kwargs)#

Bookmark of a variant or gene.

id: Mapped[UUID]#: UUID of the bookmark.

obj_id: str#: ID of the bookmarked object.

obj_type: BookmarkTypes#: Type of the bookmarked object.

user: UUID#: User who created the bookmark.

app.models.caseinfo#

Models for case information.

class app.models.caseinfo.CaseInfo(**kwargs)#

Case information.

affected_family_members: bool#: Affected family members of the patient.

age_of_onset_month: int#: Age of onset of the patient.

diseases: list[DiseaseTerm]#: Diseases of the patient.

ethnicity: Ethnicity#: Ethnicity of the patient.

family_segregation: bool#: Family segregation of the patient.

hpo_terms: list[HpoTerm]#: HPO terms of the patient.

id: Mapped[UUID]#: UUID of the case information.

inheritance: Inheritance#: Inheritance of the patient.

pseudonym: str#: Pseudonym of the patient.

sex: Sex#: Sex of the patient.

user: UUID#: User who created the case information.

zygosity: Zygosity#: Zygosity of the patient.

app.models.user#

class app.models.user.OAuthAccount(**kwargs)#

Base OAuth account table definition.

access_token: Mapped[str]#

account_email: Mapped[str]#

account_id: Mapped[str]#

expires_at: Mapped[int | None]#

id: Mapped[UUID_ID]#

oauth_name: Mapped[str]#

refresh_token: Mapped[str | None]#

user_id: UUID_ID#

app.models.user.TOKEN_SIZE = 65536#: Long tokens – 64kbytes should be enough for everyone

class app.models.user.User(**kwargs)#

email: Mapped[str]#

hashed_password: Mapped[str]#

id: Mapped[UUID_ID]#

is_active: Mapped[bool]#

is_superuser: Mapped[bool]#

is_verified: Mapped[bool]#